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Experiment Name:

Comparison of Col wild-type and mutant sid2-2 (eds16) responses to Erysiphe orontii infection

Experiment Description:

An experiment with four replicates. Arabidopsis plants were grown in a controlled environment with 14 hour photoperiod for 4 weeks. At time 0, plants for infected samples were inoculated by settling tower application of conidia from 2 to 3 infected leaves covered with 10-14 day old E. orontii cultures per 156 cm2 cell. Uninfected leaf samples were collected at 0 and 7 dpi; infected leaf samples were collected at 6 hpi, and 1, 3, 4, and 7 dpi.

Starting Date (mm/dd/yyyy):

06/07/2004

Researcher:

Mary Wildermuth

Genomics/Proteomics Site:

Massachusetts General Hospital

Genomics/Proteomics Investigator:

Fred Ausubel

Experiment Type:

transcriptional profiling
Array Name Array Type Sample Used To Make This Extract Sample Description Source For This Sample (Target) Treatment Used To Make This Extract Treatment Category Treatment Time (Hours) Files Available For Download For This Array
1 MW A. thaliana Col uninfected 0 hr exp1-3 Affymetrix SAMPLE 1-3 1 Col, uninfected, time 0 Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA 1_3_1.DAT

MW At+Eo MA 1_3_1.EXP

MW At+Eo MA 1_3_1.CEL
3 MW A. thaliana Col infected with E. orontii 1 d exp1-3 Affymetrix SAMPLE 1-3 3 Col, infected, time 1 day (24 hr) Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA 1_3_3.CEL

MW At+Eo MA 1_3_3.EXP

MW At+Eo MA 1_3_3.DAT
4 MW A. thaliana Col infected with E. orontii 3 d exp1-3 Affymetrix SAMPLE 1-3 4 Col, infected, time 3 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW At+Eo MA 1_3_4.EXP

MW At+Eo MA 1_3_4.CEL

MW At+Eo MA 1_3_4.DAT
5 MW A. thaliana Col infected with E. orontii 5 d exp1-3 Affymetrix SAMPLE 1-3 5 Col, infected, time 5 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW At+Eo MA 1_3_5.CEL

MW At+Eo MA 1_3_5.DAT

MW At+Eo MA 1_3_5.EXP
6 MW A. thaliana Col infected with E. orontii 7 d exp1-3 Affymetrix SAMPLE 1-3 6 Col, infected, time 7 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA 1_3_6.DAT

MW At+Eo MA 1_3_6.CEL

MW At+Eo MA 1_3_6.EXP
7 MW A. thaliana Col uninfected 7 d exp1-3 Affymetrix SAMPLE 1-3 7 Col, uninfected, time 7 days Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 168

MW At+Eo MA 1_3_7.EXP

MW At+Eo MA 1_3_7.CEL

MW At+Eo MA 1_3_7.DAT
8 MW A. thaliana eds16 uninfected 0 hr exp1-3 Affymetrix SAMPLE 1-3 8 eds16, uninfected, time 0 Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA 1_3_8.EXP

MW At+Eo MA 1_3_8.DAT

MW At+Eo MA 1_3_8.CEL
10 MW A. thaliana eds16 infected with E. orontii 1 d exp1-3 Affymetrix SAMPLE 1-3 10 eds16, time 1 day (24 hr) Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA 1_3_10.EXP

MW At+Eo MA 1_3_10.CEL

MW At+Eo MA 1_3_10.DAT
11 MW A. thaliana eds16 infected with E. orontii 3 d exp1-3 Affymetrix SAMPLE 1-3 11 eds16, infected, time 3 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW At+Eo MA 1_3_11.EXP

MW At+Eo MA 1_3_11.CEL

MW At+Eo MA 1_3_11.DAT
12 MW A. thaliana eds16 infected with E. orontii 5 d exp1-3 Affymetrix SAMPLE 1-3 12 eds16, infected, time 5 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW At+Eo MA 1_3_12.EXP

MW At+Eo MA 1_3_12.CEL

MW At+Eo MA 1_3_12.DAT
13 MW A. thaliana eds16 infected with E. orontii 7 d exp1-3 Affymetrix SAMPLE 1-3 13 eds16, infected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA 1_3_13.CEL

MW At+Eo MA 1_3_13.DAT

MW At+Eo MA 1_3_13.EXP
14 MW A. thaliana eds16 uninfected 7 d exp1-3 Affymetrix SAMPLE 1-3 14 eds16, uninfected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 168

MW At+Eo MA 1_3_14.EXP

MW At+Eo MA 1_3_14.DAT

MW At+Eo MA 1_3_14.CEL
1 MW A. thaliana Col uninfected 0 hr exp2-1 Affymetrix SAMPLE 2-1 1 Col, uninfected, time 0 Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA2_1_1.DAT

MW At+Eo MA2_1_1.CEL

MW At+Eo MA2_1_1.EXP
2 MW A. thaliana Col infected with E. orontii 6 hr exp2-1 Affymetrix SAMPLE 2-1 2 Col, infected, time 6 hr Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW At+Eo MA2_1_2.CEL

MW At+Eo MA2_1_2.DAT

MW At+Eo MA2_1_2.EXP
3 MW A. thaliana Col infected with E. orontii 1 d exp2-1 Affymetrix SAMPLE 2-1 3 Col, infected, time 1 day (24 hr) Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA2_1_3.EXP

MW At+Eo MA2_1_3.CEL

MW At+Eo MA2_1_3.DAT
4 MW A. thaliana Col infected with E. orontii 3 d exp2-1 Affymetrix SAMPLE 2-1 4 Col, infected, time 3 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW At+Eo MA2_1_4.DAT

MW At+Eo MA2_1_4.CEL

MW At+Eo MA2_1_4.EXP
5 MW A. thaliana Col infected with E. orontii 5 d exp2-1 Affymetrix SAMPLE 2-1 5 Col, infected, time 5 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW At+Eo MA2_1_5.EXP

MW At+Eo MA2_1_5.DAT

MW At+Eo MA2_1_5.CEL
6 MW A. thaliana Col infected with E. orontii 7 d exp2-1 Affymetrix SAMPLE 2-1 6 Col, infected, time 7 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA2_1_6.CEL

MW At+Eo MA2_1_6.EXP

MW At+Eo MA2_1_6.DAT
7 MW A. thaliana Col uninfected 7 d exp2-1 Affymetrix SAMPLE 2-1 7 Col, uninfected, time 7 days Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 168

MW At+Eo MA2_1_7.DAT

MW At+Eo MA2_1_7.CEL

MW At+Eo MA2_1_7.EXP
8 MW A. thaliana eds16 uninfected 0 hr exp2-1 Affymetrix SAMPLE 2-1 8 eds16, uninfected, time 0 Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA2_1_8.DAT

MW At+Eo MA2_1_8.CEL

MW At+Eo MA2_1_8.EXP
9 MW A. thaliana eds16 infected with E. orontii 6 hr exp2-1 Affymetrix SAMPLE 2-1 9 eds16, infected, time 6 hr Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW At+Eo MA2_1_9.CEL

MW At+Eo MA2_1_9.DAT

MW At+Eo MA2_1_9.EXP
10 MW A. thaliana eds16 infected with E. orontii 1 d exp2-1 Affymetrix SAMPLE 2-1 10 eds16, time 1 day (24 hr) Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA2_1_10.CEL

MW At+Eo MA2_1_10.DAT

MW At+Eo MA2_1_10.EXP
11 MW A. thaliana eds16 infected with E. orontii 3 d exp2-1 Affymetrix SAMPLE 2-1 11 eds16, infected, time 3 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW At+Eo MA2_1_11.EXP

MW At+Eo MA2_1_11.DAT

MW At+Eo MA2_1_11.CEL
12 MW A. thaliana eds16 infected with E. orontii 5 d exp2-1 Affymetrix SAMPLE 2-1 12 eds16, infected, time 5 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW At+Eo MA2_1_12.DAT

MW At+Eo MA2_1_12.EXP

MW At+Eo MA2_1_12.CEL
13 MW A. thaliana eds16 infected with E. orontii 7 d exp2-1 Affymetrix SAMPLE 2-1 13 eds16, infected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA2_1_13.EXP

MW At+Eo MA2_1_13.CEL

MW At+Eo MA2_1_13.DAT
14 MW A. thaliana eds16 uninfected 7 d exp2-1 Affymetrix SAMPLE 2-1 14 eds16, uninfected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 168

MW At+Eo MA2_1_14.DAT

MW At+Eo MA2_1_14.EXP

MW At+Eo MA2_1_14.CEL
1 MW A. thaliana Col uninfected 0 hr exp2-2 Affymetrix SAMPLE 2-2 1 Col, uninfected, time 0 Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 0

MW MA 2_2 At+Eo_1.DAT

MW MA 2_2 At+Eo_1.CEL

MW MA 2_2 At+Eo_1.EXP
2 MW A. thaliana Col infected with E. orontii 6 hr exp2-2 Affymetrix SAMPLE 2-2 2 Col, infected, time 6 hr Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW MA 2_2 At+Eo_2.CEL

MW MA 2_2 At+Eo_2.DAT

MW MA 2_2 At+Eo_2.EXP
3 MW A. thaliana Col infected with E. orontii 1 d exp2-2 Affymetrix SAMPLE 2-2 3 Col, infected, time 1 day (24 hr) Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW MA 2_2 At+Eo_3.CEL

MW MA 2_2 At+Eo_3.DAT

MW MA 2_2 At+Eo_3.EXP
4 MW A. thaliana Col infected with E. orontii 3 d exp2-2 Affymetrix SAMPLE 2-2 4 Col, infected, time 3 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW MA 2_2 At+Eo_4.EXP

MW MA 2_2 At+Eo_4.CEL

MW MA 2_2 At+Eo_4.DAT
5 MW A. thaliana Col infected with E. orontii 5 d exp2-2 Affymetrix SAMPLE 2-2 5 Col, infected, time 5 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW MA 2_2 At+Eo_5.CEL

MW MA 2_2 At+Eo_5.EXP

MW MA 2_2 At+Eo_5.DAT
7 MW A. thaliana Col uninfected 7 d exp2-2 Affymetrix SAMPLE 2-2 7 Col, uninfected, time 7 days Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 168

MW MA 2_2 At+Eo_7.EXP

MW MA 2_2 At+Eo_7.CEL

MW MA 2_2 At+Eo_7.DAT
8 MW A. thaliana eds16 uninfected 0 hr exp2-2 Affymetrix SAMPLE 2-2 8 eds16, uninfected, time 0 Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 0

MW MA 2_2 At+Eo_8.EXP

MW MA 2_2 At+Eo_8.DAT

MW MA 2_2 At+Eo_8.CEL
9 MW A. thaliana eds16 infected with E. orontii 6 hr exp2-2 Affymetrix SAMPLE 2-2 9 eds16, infected, time 6 hr Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW MA 2_2 At+Eo_9.CEL

MW MA 2_2 At+Eo_9.DAT

MW MA 2_2 At+Eo_9.EXP
10 MW A. thaliana eds16 infected with E. orontii 1 d exp2-2 Affymetrix SAMPLE 2-2 10 eds16, time 1 day (24 hr) Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW MA 2_2 At+Eo_10.CEL

MW MA 2_2 At+Eo_10.EXP

MW MA 2_2 At+Eo_10.DAT
11 MW A. thaliana eds16 infected with E. orontii 3 d exp2-2 Affymetrix SAMPLE 2-2 11 eds16, infected, time 3 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW MA 2_2 At+Eo_11.DAT

MW MA 2_2 At+Eo_11.CEL

MW MA 2_2 At+Eo_11.EXP
12 MW A. thaliana eds16 infected with E. orontii 5 d exp2-2 Affymetrix SAMPLE 2-2 12 eds16, infected, time 5 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW MA 2_2 At+Eo_12.EXP

MW MA 2_2 At+Eo_12.DAT

MW MA 2_2 At+Eo_12.CEL
13 MW A. thaliana eds16 infected with E. orontii 7 d exp2-2 Affymetrix SAMPLE 2-2 13 eds16, infected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW MA 2_2 At+Eo_13.DAT

MW MA 2_2 At+Eo_13.EXP

MW MA 2_2 At+Eo_13.CEL
14 MW A. thaliana eds16 uninfected 7 d exp2-2 Affymetrix SAMPLE 2-2 14 eds16, uninfected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 168

MW MA 2_2 At+Eo_14.EXP

MW MA 2_2 At+Eo_14.DAT

MW MA 2_2 At+Eo_14.CEL
1 MW A. thaliana Col uninfected 0 hr exp3-1 Affymetrix SAMPLE 3-1 1 Col, uninfected, time 0 Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA 3_1 real_1.DAT

MW At+Eo MA 3_1 real_1.CEL

MW At+Eo MA 3_1 real_1.EXP
2 MW A. thaliana Col infected with E. orontii 6 hr exp3-1 Affymetrix SAMPLE 3-1 2 Col, infected, time 6 hr Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW At+Eo MA 3_1 real_2.CEL

MW At+Eo MA 3_1 real_2.EXP

MW At+Eo MA 3_1 real_2.DAT
3 MW A. thaliana Col infected with E. orontii 1 d exp3-1 Affymetrix SAMPLE 3-1 3 Col, infected, time 1 day (24 hr) Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA 3_1 real_3.EXP

MW At+Eo MA 3_1 real_3.DAT

MW At+Eo MA 3_1 real_3.CEL
4 MW A. thaliana Col infected with E. orontii 3 d exp3-1 Affymetrix SAMPLE 3-1 4 Col, infected, time 3 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 72

MW At+Eo MA 3_1 real_4.CEL

MW At+Eo MA 3_1 real_4.DAT

MW At+Eo MA 3_1 real_4.EXP
5 MW A. thaliana Col infected with E. orontii 5 d exp3-1 Affymetrix SAMPLE 3-1 5 Col, infected, time 5 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 120

MW At+Eo MA 3_1 real_5.DAT

MW At+Eo MA 3_1 real_5.EXP

MW At+Eo MA 3_1 real_5.CEL
6 MW A. thaliana Col infected with E. orontii 7 d exp3-1 Affymetrix SAMPLE 3-1 6 Col, infected, time 7 days Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA 3_1 real_6.EXP

MW At+Eo MA 3_1 real_6.DAT

MW At+Eo MA 3_1 real_6.CEL
7 MW A. thaliana Col uninfected 7 d exp3-1 Affymetrix SAMPLE 3-1 7 Col, uninfected, time 7 days Arabidopsis thaliana, Col-0, leaves Control uninfected with E. orontii uninfected 168

MW At+Eo MA 3_1 real_7.DAT

MW At+Eo MA 3_1 real_7.EXP

MW At+Eo MA 3_1 real_7.CEL
8 MW A. thaliana eds16 uninfected 0 hr exp3-1 Affymetrix SAMPLE 3-1 8 eds16, uninfected, time 0 Arabidopsis thaliana, Col-0 eds16 mutant, leaves Control uninfected with E. orontii uninfected 0

MW At+Eo MA 3_1 real_8.DAT

MW At+Eo MA 3_1 real_8.EXP

MW At+Eo MA 3_1 real_8.CEL
9 MW A. thaliana eds16 infected with E. orontii 6 hr exp3-1 Affymetrix SAMPLE 3-1 9 eds16, infected, time 6 hr Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW At+Eo MA 3_1 real_9.CEL

MW At+Eo MA 3_1 real_9.EXP

MW At+Eo MA 3_1 real_9.DAT
10 MW A. thaliana eds16 infected with E. orontii 1 d exp3-1 Affymetrix SAMPLE 3-1 10 eds16, time 1 day (24 hr) Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 24

MW At+Eo MA 3_1 real_10.DAT

MW At+Eo MA 3_1 real_10.EXP

MW At+Eo MA 3_1 real_10.CEL
13 MW A. thaliana eds16 infected with E. orontii 7 d exp3-1 Affymetrix SAMPLE 3-1 13 eds16, infected, time 7 days Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 168

MW At+Eo MA 3_1 real_13.CEL

MW At+Eo MA 3_1 real_13.DAT

MW At+Eo MA 3_1 real_13.EXP
2 MW A. thaliana Col infected with E. orontii 6 h exp1-3 Affymetrix SAMPLE 1-3 2 Col, infected, time 6 hr Arabidopsis thaliana, Col-0, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW At+Eo MA 1-3 2.CEL

MW At+Eo MA 1-3 2.EXP

MW At+Eo MA 1-3 2.DAT
9 MW A. thaliana eds16 infected with E. orontii 6 h exp1 Affymetrix SAMPLE 1-3 9 eds16, infected, time 6 hr Arabidopsis thaliana, Col-0 eds16 mutant, leaves Erysiphe orontii - heavy innoculum E. orontii 6

MW MA 1-1 9.EXP

MW MA 1-1 9.CEL

MW MA 1-1 9.DAT

Description     Treatment List     Sample List     Array List (Raw Data)    File List (Normalized Data And Other Information)
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