NSF Arabidopsis 2010
Expression Profiling of Plant Disease Resistance Pathways Project
Xinnian Dong Lab   Frederick Ausubel Lab   Shauna Somerville Lab
 
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Table of Candidate Transcription Factors

 

 

Inducing Treatment (1,2)

Locus

Description

OGs

FLG22

Chito-oligomer

PMR5, PMR6

NPR1 targets

Induced by avr

Induced by vir

SVI-dependent (3)

At1g05710

ethylene-responsive protein

Yes

Yes

 

 

 

 

 

Yes

AT1G08320

bZIP family transcription factor, contains Pfam profile: PF00170 bZIP transcription factor

Yes

Yes

 

 

 

 

 

 

AT1G10585

Expressed protein

Yes

Yes

 

 

 

Yes

 

 

AT1G13300

myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain

Yes

Yes

 

 

 

 

 

 

AT1G18570

myb family transcription factor (MYB51), contains PFAM profile: PF00249

Yes

Yes

 

 

 

 

 

 

AT1G22810

encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.

Yes

Yes

 

 

 

 

 

 

AT1G25560

AP2 domain-containing transcription factor, putative, similar to DNA-binding protein RAV2 GI:3868859 from (Arabidopsis thaliana)

 

 

 

Yes

 

 

 

 

AT1G28370

ERF11 (ethylene response factor 11)

Yes

Yes

 

 

 

 

Yes

 

AT1G30810

transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein, contains similarity to Swiss-Prot:P29375 retinoblastoma-binding protein 2 (RBBP-2) (Homo sapiens); contains Pfam domains PF02375: jmjN domain and PF02373: jmjC domain; intron between exons 6 and 7 was required to circumvent a frameshift.  There could be an underlying sequence error.

 

 

Yes

 

 

 

 

 

AT1G42990

bZIP transcription factor family protein, contains Pfam profile: PF00170: bZIP transcription factor

Yes

Yes

 

Yes

 

 

 

 

AT1G43160

ERF (ethylene response factor), RAP2.6

 

Yes

 

 

 

Yes

Yes

 

AT1G50640

encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.

Yes

Yes

 

 

 

 

 

 

AT1G51700

Dof-type zinc finger domain-containing protein (ADOF1), identical to cDNA adof1 mRNA for dof zinc finger protein,  GI:3608260; contains Pfam profile PF02701: Dof domain, zinc finger

Yes

Yes

 

 

 

 

 

 

AT1G52890

NAM family protein.

 

Yes

 

 

 

Yes

Yes

 

AT1G57560

MYB50

 

 

 

 

 

Yes

Yes

 

AT1G62300

WRKY family transcription factor, similar to putative DNA-binding protein GI:7268215 from (Arabidopsis thaliana)

Yes

Yes

 

 

 

 

 

 

AT1G64380

encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.

 

Yes

 

 

 

 

 

 

AT1G66090

disease resistance protein (TIR-NBS class), putative, domain signature TIR-NBS exists, suggestive of a disease resistance protein.

Yes

Yes

 

 

 

Yes

Yes

 

AT1G67970

heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5), identical to heat shock transcription factor 5 (HSF5) SP:Q9S7U5 from (Arabidopsis thaliana); contains Pfam profile: PF00447 HSF-type DNA-binding domain

 

Yes

Yes

 

 

 

 

 

AT1G73830

basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain

 

repressed

Yes (4)

 

 

 

 

 

At1g77640

AP2/EREBP transcription factor

 

 

 

 

 

 

 

Yes

AT1G80590

WRKY66 

 

 

 

 

Yes

 

 

 

AT1G80840

WRKY40

Yes

Yes

 

 

 

 

Yes

 

AT2G17040

NAM family protein

 

Yes

 

 

 

Yes

 

 

AT2G21900

WRKY59 

 

 

 

 

Yes

 

 

 

AT2G23320

WRKY family transcription factor, identical to WRKY DNA-binding protein 15 GI:13506742 from (Arabidopsis thaliana)

Yes

Yes

 

 

 

 

 

 

AT2G24570

WRKY family transcription factor, identical to WRKY transcription factor 17 GI:15991743 from (Arabidopsis thaliana)

Yes

Yes

 

 

 

 

 

 

AT2G26150 

heat shock factor (AtHsfA2)

Yes

Yes

 

 

 

 

Yes

 

AT2G28710

zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type

 

Yes

 

 

 

 

 

 

AT2G30250

WRKY25

Yes

Yes

 

 

 

 

Yes

 

AT2G33710

encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.

Yes

Yes

 

 

 

 

 

 

AT2G37430

zinc finger (C2H2 type) family protein (ZAT11), contains Pfam domain, PF00096: Zinc finger, C2H2 type

Yes

Yes

 

 

 

 

 

 

AT2G38470

WRKY33

Yes

Yes

 

 

 

Yes

Yes

 

AT2G40140 

zinc finger (CCCH-type) family protein

Yes

Yes

 

 

 

Yes

Yes

 

AT2G40740

WRKY family transcription factor, contains Pfam profile: PF03106    WRKY DNA -binding domain; member of WRKY Transcription Factor; Group III

 

 

Yes

 

 

 

 

 

AT2G40750

WRKY54

 

 

 

 

Yes

Yes

Yes

 

AT2G44840 

ERF13 (ethylene response factor 13)

 

 

 

 

Yes

 

Yes

 

AT2G46400

WRKY46

Yes

Yes

 

 

 

Yes

Yes

 

AT3G01080

WRKY58 

 

 

 

 

Yes

 

 

 

AT3G04070

no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAM GB:CAA63101 (Petunia x hybrida)

Yes

Yes

repressed

 

 

Yes

 

 

AT3G11020

DREB2B 

 

 

 

 

Yes

 

 

 

AT3G11280

Myb family transcription factor, contains Pfam profile: PF00249 Myb-like DNA-binding domain

 

 

 

 

Yes

 

 

 

AT3G12910 

putative NAC domain protein

Yes

Yes

 

 

Yes

 

 

 

AT3G14470

disease resistance protein (NBS-LRR class), putative, domain signature NBS-LRR exists, suggestive of a disease resistance protein.

 

 

Yes

 

 

 

 

 

AT3G15210

ethylene-responsive element-binding factor 4 (ERF4), identical to ethylene responsive element binding factor 4 SP:O80340 from (Arabidopsis thaliana); AP2 domain containing protein RAP2.5 mRNA, complete cds

Yes

Yes

Yes

 

 

 

 

 

AT3G15540

auxin-responsive protein / indoleacetic acid-induced protein 19 (IAA19), identical to SP|O24409 Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) {Arabidopsis thaliana}

Yes

Yes

 

 

 

 

 

 

AT3G19580

zinc finger (C2H2 type) protein 2 (AZF2), identical to Cys2/His2-type zinc finger protein 2 (Arabidopsis thaliana) gi|6009885|dbj|BAA85107; mRNA levels are upregulated in response to ABA, high salt, and mild dessication.

 

Yes

Yes

 

 

 

 

 

AT3G20810

transcription factor jumonji (jmjC) domain-containing protein, contains Pfam domain PF02373: jmjC domain

 

repressed

 

Yes

 

 

 

 

AT3G23230

ethylene-responsive factor, putative, similar to EREBP-4 GB:BAA07323 from (Nicotiana tabacum)

Yes

Yes

Yes

 

 

 

 

 

AT3G23250

myb family transcription factor (MYB15), similar to myb-related transcription factor GB:CAA66952 from (Lycopersicon esculentum)

Yes

Yes

Yes

 

 

Yes

Yes

 

AT3G25730

AP2 transcription factor, putative.

Yes

Yes

 

 

Yes

 

 

 

AT3G46600

scarecrow transcription factor family protein, scarecrow-like 11 - Arabidopsis thaliana, EMBL:AF036307

 

Yes

Yes

 

 

 

 

 

AT3G49210

expressed protein

Yes

Yes

 

 

 

 

 

 

AT3G50060

myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA MYB-related protein (1107 bp) GI:1263096

 

 

Yes

 

 

 

 

 

AT3G50260

encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.

Yes

Yes

Yes

 

 

 

 

 

AT3G53600

zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type

 

Yes

Yes

 

 

 

 

 

AT3G56400

WRKY 70 family transcription factor, DNA-binding protein 4 WRKY4 - Nicotiana tabacum, EMBL:AF193771; member of WRKY Transcription Factor; Group III

 

 

Yes

 

Yes

Yes

Yes

 

AT3G58120

bZIP transcription factor family protein, contains Pfam profile: PF00170 bZIP transcription factor ;supported by cDNA gi|15100054|gb|AF401300.1|AF401300

repressed

repressed

Yes (4)

repressed

 

Yes

Yes

 

AT4G01250

WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain

Yes

Yes

 

 

 

 

 

 

AT4G01460 

bHLH family protein (BHLH057)

repressed

repressed

 

 

 

Yes

Yes

 

AT4G01960

expressed protein

 

Yes

 

 

 

 

 

 

AT4G09460

myb family transcription factor

Yes

Yes

 

 

 

 

 

 

AT4G11170

disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein.

Yes

Yes

 

 

 

 

 

 

AT4G11660

heat shock factor protein 7 (HSF7) / heat shock transcription factor 7 (HSTF7), identical to heat shock factor protein 7 (HSF7) SP:Q9T0D3 from (Arabidopsis thaliana)

 

 

Yes

 

 

 

 

 

AT4G17230

scarecrow-like transcription factor 13 (SCL13)

Yes

Yes

Yes

 

 

 

Yes

 

AT4G17490

ethylene-responsive element-binding protein, putative, similar to SP|O80341 Ethylene responsive element binding factor 5 (AtERF5) {Arabidopsis thaliana}, AtERF6 mRNA for ethylene responsive element binding factor, ERF-6 mRNA for extracellular signal-regulated factor,

Yes

Yes

 

Yes

 

 

 

 

AT4G17500

ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein, identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) (Arabidopsis thaliana); a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.; AtERF-1 mRNA for ethylene responsive element binding factor

Yes

Yes

Yes

 

 

 

 

 

AT4G18170

WRKY family transcription factor, similar to DNA-binding protein 2 GI:4322940 from (Nicotiana tabacum); contains Pfam profile: PF03106 WRKY DNA -binding domain; member of WRKY Transcription Factor; Group II-c

Yes

Yes

Yes

 

 

 

 

 

AT4G18880

At-HsfA4A, heat shock transcription factor 21 (HSF21), identical to heat shock transcription factor 21 (Arabidopsis thaliana) GI:3399765; contains Pfam profile: PF00447 HSF-type DNA-binding domain

Yes

Yes

Yes

 

 

 

Yes

 

AT4G23810

WRKY53

Yes

Yes

 

 

Yes

Yes

Yes

 

AT4G27410 

NAM family protein (RD26)

 

 

 

 

 

Yes

Yes

 

AT4G31680

putative auxin response factor 24

 

 

 

 

 

 

Yes

 

AT4G31800

WRKY 18 family transcription factor; AF224698 Arabidopsis thaliana WRKY DNA-binding protein 18 (WRKY18) mRNA, complete cds

Yes

Yes

Yes

 

Yes

Yes

Yes

 

AT4G36540 

bHLH family protein (BHLH058)

repressed

repressed

 

 

 

Yes

Yes

 

AT4G36990 

heat shock factor protein 4

Yes

Yes

 

 

 

Yes

Yes

 

AT4G37780

myb family transcription factor (MYB87), identical to AtMYB87 R2R3-MYB transcription factor GI:2832559 from (Arabidopsis thaliana); contains Pfam profile: PF00249 myb-like DNA-binding domain

 

Yes

 

 

 

 

 

 

AT5G04340

zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type

Yes

Yes

Yes

 

 

 

 

 

AT5G05090

Myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain

 

 

 

 

Yes

 

 

 

AT5G13080

WRKY 75 family transcription factor, WRKY DNA binding protein - Solanum tuberosum, EMBL:AJ278507; member of WRKY Transcription Factor; Group II-c

Yes

Yes

Yes

Yes

 

Yes

 

 

AT5G15210

zinc finger homeobox family protein / ZF-HD homeobox family protein, various predicted proteins, Arabidopsis thaliana

 

Yes

 

 

 

 

 

 

AT5G22290

no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain

Yes

Yes

 

 

 

 

 

 

AT5G22380

NAM family protein

 

Yes

 

 

 

Yes

 

 

AT5G22570

WRKY38

 

 

 

 

Yes

Yes

 

 

AT5G24110

member of WRKY Transcription Factor; Group III

Yes

Yes

 

 

 

 

 

 

AT5G24590

turnip crinkle virus-interacting protein / TCV-interacting protein (TIP), contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 (GI:6456751) {Arabidopsis thaliana}; identical to cDNA TIP mRNA,  GI:9408600

Yes

Yes

Yes

 

 

 

 

 

AT5G43170

zinc finger (C2H2 type) protein 3 (AZF3), identical to Cys2/His2-type zinc finger protein 3 (Arabidopsis thaliana) gi|6009889|dbj|BAA85109; mRNA levels are elevated in response to high salinity and low temperature.

Yes

Yes

Yes

 

 

 

 

 

AT5G45710

heat shock transcription factor family protein, contains Pfam profile: PF00447 HSF-type DNA-binding domain

 

Yes

 

 

 

 

 

 

AT5G46910

transcription factor jumonji (jmj) family protein, contains Pfam domains PF02375: jmjN domain and PF02373: jmjC domain

Yes

Yes

Yes

 

 

 

 

 

AT5G47220

ethylene-responsive element-binding factor 2 (ERF2), identical to SP|O80338 Ethylene responsive element binding factor 2 (AtERF2) (Arabidopsis thaliana); ERF transcription factor containing. Function as activator of GCC boxûdependent transcription.

 

 

Yes

Yes

 

 

 

 

AT5G47370

homeobox-leucine zipper protein 2 (HAT2) / HD-ZIP protein 2, identical to homeobox-leucine zipper protein HAT2 (HD-ZIP protein 2) (Arabidopsis thaliana) SP:P46601; contains Pfam profiles PF04618: HD-ZIP protein N terminus, PF02183: Homeobox associated leucine zipper,  PF00046: Homeobox domain

Yes

 

 

 

 

 

 

 

AT5G48150

phytochrome A signal transduction 1 (PAT1)

Yes

Yes

 

 

 

 

 

 

AT5G49520

member of WRKY Transcription Factor; Group II-c

Yes

Yes

 

 

 

 

 

 

AT5G51190

encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.

Yes

Yes

 

 

 

 

 

 

AT5G59450

scarecrow-like transcription factor 11 (SCL11), scarecrow-like 11, Arabidopsis thaliana, EMBL:AF036307

Yes

Yes

Yes

 

 

 

 

 

AT5G59820

zinc finger (C2H2 type) family protein (ZAT12), identical to zinc finger protein ZAT12 (Arabidopsis thaliana) gi|1418325|emb|CAA67232

Yes

Yes

Yes

 

 

 

 

 

AT5G62020

heat shock factor protein, putative (HSF6) / heat shock transcription factor, putative (HTSF6), identical to heat shock transcription factor 6 (HSF6) SP: Q9SCW4 from (Arabidopsis thaliana) ;contains Pfam profile: PF00447 HSF-type DNA-binding domain

Yes

Yes

Yes

 

 

 

 

 

AT5G62470

myb family transcription factor (MYB96), contains Pfam profile: PF00249 myb-like DNA-binding domain

Yes

Yes

Yes

 

 

 

 

 

 Notes:
1. Only statistically significant responses are shown in columns C-J.
2. Only up-regulated responses are shown, unless noted otherwise.
3. Upregulated in cpr5 and cpr5npr1 but not in cpr5npr1svi1.
4. Upregulated by chito-oligomers and dependent on RRE1.


Last updated on 7/16/07.
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