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Current Markers

Compilation of SNAP markers

Marker Name Map Position Columbia-Specific Primer Pair (5'-forward-3' and 5'-reverse-3') Landsberg-Specific Primer Pair (5'-forward-3' and 5'-reverse-3')
Genetica Physicalb

SGCSNP131c 1/0.00 F22L4 5'-gactctttggtcaagtcaatcacatgctctatg-3' 5'-tccggcgtgaactgcaagtaaaatctt-3'
5'-attaatttttccagcaatgcgtgc-3' 5'-tagtctgcacatgtataaacgtacgtcctccac-3'
SGCSNP5c 1/2.61 F22L4 5'-actgtgaagtcgtgcactgtaggcatctc-3' 5'-ctgtgaagtcgtgcactgtaggcatctg-3'
5'-attttgcaaccaaaaagtacaatcggcc-3' 5'-gggattaatggaccgaccatgtcc-3'
SGCSNP151c 1/3.35 F19P19 5'-gaaccaatggtggcgaaattaccaaac-3' 5'-gaaccaatggtggcgaaattaccactt-3'
5'-ctacagctttaccaacacgcaatgcctt-3' 5'-tccggaatgtgaagctccggc-3'
SGCSNP170c 1/7.66 T25N20 5'-acataacgaatacaatagagagaatgcaagagatgt-3' 5'-acataacgaatacaatagagagaatgcaagagaatc-3'
5'-tcgtaggttttaccagtggtccacgat-3' 5'-cagtggtccacgatagactgaatattgcg-3'
SGCSNP107c 1/11.86 F14J9 5'-catcacgcatcagcatatcgccc-3' 5'-ggagcatcacgcatcagcatatcacat-3'
5'-taccttgtgtggctccacccttagagc-3' 5'-ggctccacccttagagcaccgc-3'
SGCSNP138c 1/14.69 F21M12 5'-cgcaccttcttcagccttcatttatatagcaa-3' 5'-attcttttcactatataaatagtctcatccgtgcg-3'
5'-tctttgaacggatcctccctgatcg-3' 5'-tgcctctgctactggggcttcctt-3'
SGCSNP109c 1/61.13 F13A11 5'-ttatgggagtcaatgagcaagactatggtgac-3' 5'-aactttaaacggacctaataatgttagcgacatta-3'
5'-aaaaagactggaatccttacttggtctccg-3' 5'-cagagaccctcttaagcttccatgggc-3'
SGCSNP17 1/61.21 F1I21 5'-ttgtcacaagtaagagttggccta-3' 5'-ttgtcacaagtaagagttggtctc-3'
5'-ttgtatcattggggtctaattggg-3' 5'-ttgtatcattggggtctaattggg-3'
SGCSNP143c 1/70.73 NDd 5'-ccccaagcaaagcaatacttgccattc-3' 5'-ccccaagcaaagcaatacttgccatct-3'
5'-gtggcggttggatacggaactgag-3' 5'-actagaccacggagttgtggcggtt-3'
SGCSNP69c 1/81.84 F15I1 5'-tacctattcttcgacggacgtaac-3' 5'-tacctattcttcgacggacgtgat-3'
5'-gttgaacggtggctgacgttgggg-3' 5'-gttgaacggtggctgacgttgggg-3'
SGCSNP186 1/115.32 T9N14 5'-agtagtcctactgaggctattacg-3' 5'-agtagtcctactgaggctattgcc-3'
5'-ttcaccaagcaacaacgtctgttg-3' 5'-ttcaccaagcaacaacgtctgttg-3'
SGCSNP95c 1/129.49 YUP8H12R 5'-gcaaggtttgtagtaactgaaaacggcgtt-3' 5'-gggcaaggtttgtagtaactgaaaacggtctc-3'
5'-attccggcgagagttaccgcc-3' 5'-gtacacaagaagagcacctccggca-3'
SGCSNP184c 2/18.52 T6P5 5'-gtcactatctttccaagagtcatcaatgaaacaaag-3' 5'-gtcactatctttccaagagtcatcaatgaaacatta-3'
5'-atcacaaataccaacggtcccagg-3' 5'-gaatgcccaccagcactctaaacttgc-3'
SNAP80 2/37.14 F5H14 5'-caagctcctcctgcggtttcactc-3' 5'-caagctcctcctgcggtttcctta-3'
5'-ttggctctggctttactccaccgt-3' 5'-ttggctctggctttactccaccgt-3'
SGCSNP60 2/44.72 T28I24 5'-atgatcgctttatcctcctctaca-3' 5'-atgatcgctttatcctcctctctg-3'
5'-ttcactacaaatccgaatggcacc-3' 5'-ttcactacaaatccgaatggcacc-3'
SNAP108 2/47.97 F17H15 5'-cattctcttccgtcaaccttaaga-3' 5'-cattctcttccgtcaaccttaatg-3'
5'-tccaatcatgagatcgacctcgag-3' 5'-tccaatcatgagatcgacctcgag-3'
SGCSNP56 2/64.12 T28P16 5'-tattgagtttttggaaacatggct-3' 5'-tattgagtttttggaaacatgagc-3'
5'-ggggtaggagcagcattggaagtg-3' 5'-ggggtaggagcagcattggaagtg-3'
SGCSNP48 2/64.12 F25I18 5'-acatgcagagcacggataattcatccc-3' 5'-ttttttttgttgttgtttgatttttgttcgcttt-3'
5'-gcgttcttcttgagcatctccgacc-3' 5'-acagaatagaaaagatagcgacagaccctca-3'
SGCSNP106c 2/72.11 T16B24 5'-tcaatcattaaatgaccgcttcaattttacgtc-3' 5'-atatcaatcattaaatgaccgcttcaattttacgtg-3'
5'-tgaggagactggtaatgccgtgtgaac-3' 5'-ggcatgaggagactggtaatgccg-3'
SGCSNP37c 2/72.45 F12L6 5'-tattgaatcggcctaagcaagcttgttctc-3' 5'-aaggtgttaatagttgcacagagatatcaatagcgc-3'
5'-cagtaaagaaccagaagcagtttgaccaatgtaac-3' 5'-acattggcgattagaatatcaaacattgcaaa-3'
SGCSNP9c 2/78.06 T14P1 5'-cattcaccttttagtcattatattgtcaagctgagg-3' 5'-cattcaccttttagtcattatattgtcaagctaaac-3'
5'-tggatcctaaaatagaatcggatttggtgatt-3' 5'-atgcatttgcaggtgaagctttctgg-3'
SGCSNP115c 3/3.32 T1B9 5'-tgcatgatcaccatggtccattgc-3' 5'-tgcatgatcaccatggtccaagga-3'
5'-gattactctatgatcttttcgagg-3' 5'-gattactctatgatcttttcgagg-3'
SGCSNP54 3/12.01 T16O11 5'-ttggggtccaccgcctcggtacta-3' 5'-ttggggtccaccgcctcggtactg-3'
5'-tagtccaattcaagccggttcacag-3' 5'-tagtccaattcaagccggttcacag-3'
SGCSNP11c 3/14.78 F9F8 5'-cgtctctcaatttctatctctgtctctggatcg-3' 5'-atcgtctctcaatttctatctctgtctctggttga-3'
5'-aacaataggtatagggtgtgaaacattgaaacg-3' 5'-gaaacaataggtatagggtgtgaaacattgaaacgt-3'
SGCSNP224c 3/43.65 MLJ15 5'-gtatattttctctttgttgctcctatcttctgcaag-3' 5'-gtatattttctctttgttgctcctatcttctgcaaa-3'
5'-agaagacgactgcccaaaactgg-3' 5'-gacgactgcccaaaactggccat-3'
SGCSNP225c 3/43.65 MLJ15 5'-caaagacccgatcttttagctacttctagtgattac-3' 5'-catcatcagagattcgccataaacggaga-3'
5'-gtcgaatgctccttatcacggagatcaa-3' 5'-ggtttatgctacattgaagcaaagatggttacg-3'
SGCSNP237c 3/47.16 K16N12 5'-gtaagtgtatacagtgcataaacaaactggttaagg-3' 5'-gtaagtgtatacagtgcataaacaaactggttaaga-3'
5'-ttatgatgggttttcgtgacacgtgct-3' 5'-ttatgatgggttttcgtgacacgtgct-3'
SNAP77 3/51.95 MOD1 5'-cagtttccgaagtaagtccccgtg-3' 5'-cagtttccgaagtaagtccccgta-3'
5'-cgatgtcgtgttagccacgctagt-3' 5'-cgatgtcgtgttagccacgctagt-3'
SNAP100 3/65.78 T24C20 5'-cgaaatccatcggttgattctccg-3' 5'-cgaaatccatcggttgattcactt-3'
5'-catgtttaaacccttagagaacac-3' 5'-catgtttaaacccttagagaacac-3'
SGCSNP41c 4/5.15 T18A10 5'-ttcattttcgaatatctgctcttttgtgtttgact-3' 5'-cattttcgaatatctgctcttttgtgtttgaca-3'
5'-gtgtatgaaccgggtttagaatcacgtttacc-3' 5'-gtgtatgaaccgggtttagaatcacgtttacc-3'
SGCSNP24c 4/30.88 F24G24 5'-agacttacgattttgcacatgagagcacaag-3' 5'-caactccttttgcttgcttcgatttgatg-3'
5'-gggaccagtagtatcgaacgacccaga-3' 5'-aattgaagccacagaagtaaacacagcatga-3'
SGCSNP64 4/50.90 FCA0 5'-gaagtcagatggtgttcctgcaacattttt-3' 5'-gcggcgtggtcttgagtggtg-3'
5'-ttaacaccagtggtagtttcctcagagacacc-3' 5'-cataccgctcgtgcagcgtgtt-3'
SGCSNP102c 4/55.57 FCA5 5'-tcgctagcctacaccttggtatttacggtttaa-3' 5'-gctagcctacaccttggtatttacggtccac-3'
5'-aaagaggaaagagcggccaaggag-3' 5'-cgggattacgcaatatttaggaagagagga-3'
SNAP58 4/66.16 F9F13 5'-ggtacggtggctacagggcgtctc-3' 5'-ggtacggtggctacagggcgtgat-3'
5'-tgaatacccctaagcaacaaccct-3' 5'-tgaatacccctaagcaacaaccct-3'
SGCSNP149c 4/75.69 M7J2 5'-agcggcgaacatttaagaccaacctg-3' 5'-gcaagcggcgaacatttaagaccaaatta-3'
5'-ttagaccccaatctcttaccatatcactgactttg-3' 5'-caatctcttaccatatcactgactttgcttccc-3'
SGCSNP152c 4/76.81 T13J8 5'-gagataggttcacaattgcggcag-3' 5'-gagataggttcacaattgcgactc-3'
5'-tcctccgatcatccgtccccgtct-3' 5'-tcctccgatcatccgtccccgtct-3'
SGCSNP79c 4/110.17 T19P19 5'-gcctacttcaattgtgagctacaatcacttgtga-3' 5'-cctacttcaattgtgagctacaatcacttgagc-3'
5'-ctgtgaactgacgaacctctccctcg-3' 5'-gaacctctccctcggatttgaactgg-3'
SGCSNP53c 4/110.40 T5J17 5'-aagcaacttgctactaaggttttgttccttcatg-3' 5'-aagcaacttgctactaaggttttgttccttcctt-3'
5'-ctaagacagcatggctctggaaacg-3' 5'-tcttgagcaatctcacggactagcct-3'
SGCSNP4c 5/18.86 MJJ3 5'-atgccgtcactgggaggcaagaa-3' 5'-atgccgtcactgggaggcatgag-3'
5'-gcttaccaggagctcttgtcaccgc-3' 5'-aatttaattgcagatcggcctttgac-3'
SGCSNP123c 5/18.87 MJJ3 5'-gagaacttggtggccaagttaaat-3' 5'-gagaacttggtggccaagttactc-3'
5'-aaggggtctgcaaatgttcgccgc-3' 5'-aaggggtctgcaaatgttcgccgc-3'
SGCSNP126c 5/90.13 MJB21 5'-tcctcgagactatacttgaagttaaaccccacg-3' 5'-cattgaattcagttccaagaagctgacgaaa-3'
5'-cctatcactcgtacgtgtgtgtgcttcttc-3' 5'-gcaaagttcggtcgattcaaagacagc-3'
SGCSNP97c 5/93.07 K9D7 5'-cttcctcaagagctcagataaagcccgt-3' 5'-cagcttcctcaagagctcagataaagcacag-3'
5'-ctggtgctgtacttatgccatataggtgagcta-3' 5'-ttcttagaaatgatgccgggcttgc-3'
SNAP54 5/93.75 MBD2 5'-gcaagtttttctctgataacgagt-3' 5'-gcaagtttttctctgataacaaag-3'
5'-agattcagcctagagttgtttcc-3' 5'-agattcagcctagagttgtttcc-3'
SNAP18 5/93.75 MMG4 5'-tagtcctttccgttctcggttcga-3' 5'-tagtcctttccgttctcggttctg-3'
5'-aaatggtggtattgataccgaagc-3' 5'-aaatggtggtattgataccgaagc-3'
SGCSNP44 5/113.80 MTI20 5'-ggaactggcatcaatcaggcctccta-3' 5'-cacacgtaataagcccttgcattaaggca-3'
5'-gcatctggaacgggttaggccct-3' 5'-caagctggccctgggcttacg-3'
SGCSNP124 5/119.05 MAF19 5'-aggaagaaggcgtgacagagaacg-3' 5'-aggaagaaggcgtgacagagaact-3'
5'-ggttttgatagcagcaagctgggt-3' 5'-ggttttgatagcagcaagctgggt-3'
SGCSNP29c 5/121.87 MGI19 5'-ccagcaccaaccatcaaagtcttttcaa-3' 5'-gctactcagatgggatactatgttaaggattcagca-3'
5'-gccatgcctcagttgtttgccact-3' 5'-aatggattgctatattcaactgcaatcccaa-3'
SGCSNP19 5/123.85 MAC9 5'-aaaacttggttttgtaatatgttgcctgagaatcta-3' 5'-atccagaaaggacaatctaaaccaagagaagtctg-3'
5'-cagactgaaccaatgtagatccttacttggtgac-3' 5'-ggaagctcatgcttccctacactgctc-3'
SGCSNP84c 5/140.75 MHJ24 5'-gatggttggatctgcggtttgtacg-3' 5'-tgtggtgtattcaggaacaggctattcaatactaca-3'
5'-tttagcattagccgctcgtgacacagt-3' 5'-tacggatttccccattagctccggt-3'
SGCSNP101c 5/142.02 MUA2 5'-gacactctctgatttctcggtctccgattatc-3' 5'-aacgacagagagacataagtaagaggaaagtacaaa-3'
5'-tagcaaaagcagggcgttttcgc-3' 5'-tgtttctcttagtgggccctagcagac-3'
a  Chromosome/genetic map position in centiMorgans.     b  Clone designation.     c  Markers mapped using the Affymetrix-based mapping technique (Cho et al. (1999) Nature Genetics. 23:203-207.).     d  ND, Not determined.    
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